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Publications

Peer-reviewed publications

2023

Taylor WT.T., (20 more authors), Fages A., (56 more authors), Orlando L. Early dispersal of domestic horses into the Great Plains and northern Rockies. Science 379 (6639), 1316-1323.

https://doi.org/10.1126/science.adc9691

Berki B., Sacher F., Fages A., Tschopp P., Luxey M. A method to investigate muscle target-specific transcriptional signatures of single motor neurons. Developmental Dynamics 252, Issue 1, 208-219.

https://doi.org/10.002/dvdy.507

2023

Todd, E., Tonasso-Calvière L., Chauvey L., Schiavinato S., Fages A., (40 more authors), Orlando L. The genomic history and global expansion of domestic donkeys. Science 377 (6611), 1172-1180.

https://doi.org/10.1126/science.abo3503

2022

Clavel B., Lepetz S., Chauvey L., Schiavinato S., Tonasso-Calvière L., Liu X., Fages A.,  Khan N., Seguin-Orlando A., Der Sarkissian C., Clavel P., Estrada O., Alioglu D., Gaunitz C., Aury J-M., Barme M., Bodu P., Olive M., Bignon-Lau O., Castel J-C., Boudadi-Maligne M., Boulbes N., Bourgois A., Decanter F., Foucras S., Frère S., Gardeisen A., Jouanin G., Méla C., Morand N., Nieto Espinet A., Perdereau A., Putelat O., Rivière J., Robin O., Salin M., Valenzuela-Lamas S., Vallet C., Yvinec J-H., Wincker P., Orlando L. Sex in the city: Uncovering sex-specific management of equine resources from prehistoric times to the Modern period in France. Journal of Archaeological Science: Reports, 41,103341.

https://doi.org/10.1016/j.jasrep.2022.103341

2022

Librado P., Khan N., Fages A., (159 more authors), Orlando L. The origins and spread of domestic horses from the Western Eurasian steppes. Nature 598, 634-640.

https://doi.org/10.1038/s41586-021-04018-9

2021

Lepetz S., Clavel B., Alioglu D., Chauvey L., Schiavinato S., Tonasso-Calvière L., Liu X., Fages A., Khan N., Seguin-Orlando S., Der Sarkissian C., Clavel P., Estrada O., Gaunitz C., Aury J-M., Barme M., Boulbes N., Bourgois A., Decanter F., Foucras S., Frère S., Gardeisen A., Jouanin G., Méla C., Morand N., Nieto Espinet A., Perdereau A., Putelat O., Rivière J., Robin O., Salin M., Valenzuela-Lamas S., Vallet C., Yvinec J-H., Wincker P., Orlando L. Historical management of equine resources in France from the Iron Age to the Modern Period.  Journal of Archaeological Science: Reports, 40, Part B, 103250.

https://doi.org/10.1016/j.jasrep.2021.103250

2021

Lovász L., Fages A., Amrhein V. Konik, Tarpan, European wild horse: An origin story with conservation implications. Global Ecology and Conservation, 32, e01911.

 https://doi.org/10.1016/j.gecco.2021.e01911

2021

Fages A.#, Seguin-Orlando A., Germonpré M., Orlando L. Horse males became over-represented in archeological assemblages during the Bronze Age. Journal of Archaeological Science: reports, 31, 102364.

https://doi.org/10.1016/j.jasrep.2020.102364

2020

Dolle D.*, Fages A.*, Mata X., Schiavinato S., Tonasso-Calvière L., Chauvey L., Wagner S., Der Sarkissian C., Fromentier A., Seguin-Orlando A., Orlando L. CASCADE : a Custom-made Archiving System for the Conservation of Ancient DNA Experimental Data. Frontiers in Ecology and Evolution 8, 185.

https://doi.org/10.3389/fevo.2020.00185

2020

Granado J.D., Dill N., Gaunitz G., Fages A., Khan N., Schernig Mráz M., Deschler-Erb S., Orlando L., Schlumbaum A. The mules that are not mules – metrics, morphology, archaeogenomics and mtDNA d-loop diversity in equids from Roman Switzerland. Journal of Archaeological Science, 123, 105253. 

https://doi.org/10.1016/j.jas.2020.105253

2020

Fages A.*, Hanghoej K.*, Khan N.*, (117 more authors), Orlando L. Tracking five millennia of horse management with extensive ancient genome time-series. Cell, 177 (6), 1419-1435.

https://doi.org/10.1016/j.cell.2019.03.049

2019

Gaunitz G.*, Fages A.*, (44 more authors), Outram A.K., Orlando L. Ancient genomes revisit the ancestry of domestic and Przewalski’s horses. Science 360 (6384), 111-114.

https://doi.org/10.1126/science.aao3297

2018

Taylor W., Shnaider S., Abdykanova A.,Fages A., Welker F., Irmer F., Seguin-Orlando A., Khan N., Douka K., Kolobova K., Orlando L., Krivoshapkin A., Boivin N. Early pastoral economies along the Ancient Silk Road: Biomolecular evidence from the Alay Valley, Kyrgyzstan. PloS one 13 (10).

https://doi.org/10.1371/journal.pone.0205646

2017

Day J.J., Fages A., Brown K.J., Vreven E.J., Stiassny M.L.J., Bills R., Friel J.P., Rüber L. Multiple independent colonizations into the Congo Basin during the continental radiation of African Mastacembelus spiny eels. Journal of Biogeography 44 (10), 2308-2318.

https://doi.org/10.1111/jbi.13037

2017

Librado P., Gamba C., Gaunitz G., Der Sarkissian C., Pruvost M, Albrechtsen A., Fages A., Khan N., Schubert M., Jagannathan V., Serres-Armero A., Kuderna L.F.K., Povolotskaya I.S., Seguin-Orlando A., Lepetz S., Neuditschko M., Thèves C., Alquraishi S., Alfarhan A.H., Al-Rasheid K., Rieder S., Samashev Z., Francfort H.P., Benecke N., Hofreiter M., Ludwig A., Keuser C., Marques-Bonet T., Ludes B., Crubézy E., Leeb T., Willerslev E., Orlando L. Ancient genomic changes associated with domestication of the horse. Science 360 (6384), 111-114.

https://doi.org/10.1126/science.aam5298

2017

Schubert M., Mashkour M., Gaunitz G., Fages A., Seguin-Orlando A., Sheikhi S., Alfarhan A.H., Alquraishi S.A., Al-Rasheid K.A.S., Chuang R., Ermini L., Gamba C., Weinstock J., Vedat O., Orlando L. Zonkey: a simple, accurate and sensitive method to identify first generation equid hybrids in archaeological assemblages based on genetic information. Journal of Archaeological Science 78, 147-157. 

https://doi.org/10.1016/j.jas.2016.12.005

2017

Librado P., Fages A., Gaunitz G., Leonardi M., Wagner S., Khan N., Hanghøj K., Alquraishi S.A., Alfarhan A.H., Al-Rasheid K.A., Der Sarkissian C., Schubert M., Orlando L. The evolutionary origin and genetic makeup of domestic horses. Genetics 204 (2), 423-434.

https://doi.org/10.1534/genetics.116.194860

2016

Dávalos C., Llamas B., Gaunitz G., Fages A., Gamba C., Soubrier J., Librado P., Seguin-Orlando S., Pruvost M., Alfarhan A.H., Alquraishi S.A., Al-Rasheid K.A.S., Scheu A., Beneke N., Ludwig A., Cooper A., Willerslev E., Orlando L. Experimental conditions improving in-solution target enrichment for ancient DNA. Molecular Ecology Resources 17 (3), 508-522.

https://doi.org/10.1111/1755-0998.12595

2016

Der Sarkissian C., Ermini L., Schubert M., Yang M.A. Librado P., Fumagalli M., Jónsson H., Bar-Gal G.K., Albrechtsen A., Vieira F.G., Petersen B., Ginolhac A., Seguin-Orlando A., Magnussen K., Fages A., Gamba C., Lorente-Galdos B., Polani S., Steiner C., Neuditschko M., Jagannathan V., Feh C., Greenblatt C.L., Ludwig A., Abramson N.I., Zimmermann W., Schafberg R., Tikhonov A., Sicheritz-Ponten T., Willerslev E., Marques-Bonet T., Ryder O.A., McCue M., Rieder S., Leeb T., Slatkin M., Orlando L.. Evolutionary genomics and conservation of the endangered Przewalski’s horse. Current Biology 25 (19), 2577-2583.

https://doi.org/10.1016/j.cub.2015.08.032

2015

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